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RuleGO
Rule analysis
Calculate rules quality
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Submit new set
Select organism:
Organism must be selected
Saccharomyces Genome Database (SGD)
Homo sapiens
Mus musculus
Rattus norvegicus
Drosophila melanogaster
Arabidopsis thaliana
Leishmania major
Oryza sativa
Primary set:
From text
From file
Example data
Reference set:
From text
From file
Rest of genome
Reference set file:
Statistical test
Hypergeometric:
Over-representation terms in primary set items
Significance level:
FDR:
Gene ontologies
Biological process
Molecular function
Cellular component
Error:
At least one ontology must be selected
Hierarchical annotations
Non IEA Terms
Ontology level:
Min
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Max
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Error:
Min ontology level cannot be greater than Max ontology level
The GO terms which should be included into the rules (If whole GO graph should be taken into account, leave empty):
Angiogenesis
Cell chemotaxis
Inflammatory response
Use only above terms to create rules
The GO terms which should NOT be included into the rules:
Angiogenesis
Cell chemotaxis
Inflammatory response
Algorithm options
Minimal number of genes described by GO term:
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Maximal number of GO terms in a rule premise:
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Minimal support:
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Maximal number of generated rules:
Rules filtration
Select / Deselect All
Rule quality
Rule length
Ontology level
Rules similarity
Minimal similarity treshold
Output rules order
Sort rules by the compund quality measure
Sort rules by p-value
Notification E-Mail
Error:
Incorrect format of E-Mail
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